J2a2-PF5050,PF5053: refinement based on analysis of Sardinian and Kuwaiti data


J2a2 2015-07-28

J2a2 2015-07-28

The publication of Francalacci et al. 2015 Sardinian samples 826-835 as well the BigY result of 208140 Kuwait allowed further refinement of the J2a2 subclades which is very needed since not many Y-NextGenSequences in this Haplogroup are known. Earlier ancient and modern genomes allowed the discovery of  J2a2-PH3085,SK1403: Ancient Altai, modern Uygur and Turkish.

Sardinian 826-828: form the Z28317,Z28324 clade downstream of PF5058,PF5035 and parallel to PF7384,PF5000.
Sardinian 827-828: form the Z28370,Z28373 clade approx. downstream of Z28317,Z28324.
E16051 Lebanon BigY results by Geno2 PF5058,PF5035(xPF7384,PF5000) are pending and expected to share some SNPs with the Sardinians.

Sardinian 832-835: form the PF5048,PF5070 clade which was already included in the J2-M172 Research Tree but with the new data seems to be confirmed and not sharing any SNPs downstream of PF5056,PF4993 with the other two subclades Z35890,P279 and PH3085,SK1403.

Sardinian 830-831 and 208140 Kuwait: form the Z28420,Z38500 clade downstream of Z35890,P279 and parallel to M340.
Sardinian 830-831: form the Z28412,Z28424 clade approx. downstream of Z28420,Z38500.
It would be very useful for better comparison if 208140 Kuwait orders the YFull analysis and joins the YF-J2a group.

Involved SNPs

PF5050 Additional equiv. SNPs:

2771681CGJ2a2Z35772
17784597GTJ2a2Z35773
21498408ACJ2a2Z35774
22517208CGJ2a2Z35775
8151589GAJ2a2Z38487

Z35890,P279 Additional equiv. SNPs:

8562101TCJ2a2a1a1Z35890
7053529TCJ2a2a1a1Z37824
9822441CGJ2a2a1a1Z37825
23590801TCJ2a2a1a1Z37826
16280809ACJ2a2a1a1Z38497

Z28420,Z38500

15903208AGJ2a2a1a1bZ28420
24002273GTJ2a2a1a1bZ38500
14021829CAJ2a2a1a1b approx.Z38515
14190885CTJ2a2a1a1b approx.Z38516
14415604ACJ2a2a1a1b approx.Z38517

Z28412,Z28424

 

23294100CAJ2a2a1a1b1 approx.Z28411
15308317TCJ2a2a1a1b1 approx.Z28412
21841018CAJ2a2a1a1b1 approx.Z28413
16456278CTJ2a2a1a1b1 approx.Z28414
18980884CTJ2a2a1a1b1 approx.Z28415
23029428GAJ2a2a1a1b1 approx.Z28416
18199809TCJ2a2a1a1b1 approx.Z28417
19560421TGJ2a2a1a1b1 approx.Z28418
17112461CTJ2a2a1a1b1 approx.Z28419
17661691GAJ2a2a1a1b1 approx.Z28421
18159848TCJ2a2a1a1b1 approx.Z28422
19149033GCJ2a2a1a1b1 approx.Z28423
21837251CTJ2a2a1a1b1 approx.Z28424

PF5048,PF5070

21858409TCJ2a2a1a3 approx.PF5048
23607452CAJ2a2a1a3 approx.PF5061
8457657AGJ2a2a1a3 approx.PF5070
9064867TCJ2a2a1a3 approx.PF5072
22937166TGJ2a2a1a3 approx.PF5082
8676462CTJ2a2a1a3 approx.Z38498
7341882ATJ2a2a1a3 approx.Z28427

Z28317,Z28324

17741700TCJ2a2a2Z28306
7075373GCJ2a2a2Z28317
19054115CTJ2a2a2Z28320
7109579TCJ2a2a2Z28321
15129155CGJ2a2a2Z28324
28784560CTJ2a2a2Z28326
17883421TCJ2a2a2Z28328
23073420CTJ2a2a2Z28361

Z28370,Z28373

17942545CGJ2a2a2a approx.Z28367
23289386GAJ2a2a2a approx.Z28368
2678047CTJ2a2a2a approx.Z28369
17511658ATJ2a2a2a approx.Z28370
23486681TAJ2a2a2a approx.Z28371
18794816CAJ2a2a2a approx.Z28372
15359752CTJ2a2a2a approx.Z28373
16001844GTJ2a2a2a approx.Z28374

 


About Chris Rоttensteiner

Chris Rоttensteiner. Population Genetics: Phylo-Genetics & Haplogroups, Population Admixture & History, Family and Genetic Genealogy, South Tyrol, Alps, Central Europe.