SNPs

Y-SNPs: mostly unique persistent mutation events in the Y-chromosome

J2-M172 Stats from FTDNA Y-DNA Haplotree (BigY) and YFull YTree

 in FTDNA / J2-M172 / Phylogeny / Y-sequence  tagged J-M172 / NGS / Phylogeny / Statistics / Stats / WGS by

Current subclades (FamilyTreeDNA) and id’s (YFull YTree v11.04.00) analysis. It is biased against customers of Y-clusters or regions of which descendants do more BigY/NGS testing (Ashkenazi/Europe, Northwest Europe, Georgia, Armenia, Rhine/Germans, Arabia, Russia, others Europe, etc.). Most common major subgroups:J2a-L26 73.5%J2a-M67 26.3%J2a-L24 24.8%J2b 20.7%J2a-PF5197 9.1 % Most common (3+%) from the 46 Pre-Chalcolithic J-M172 main sub-haplogroups (defined 2021)J2b-M102>Z529>Z1827>Z593>M241>L283 11.5%J2a-CTS7683>L26>PF5088>PF5160>L24>Z393>L25>Z7700,F3133 11.4%J2a-CTS7683>L26>PF5088>PF5125>Z2227>L558>M67>Z1847>Z7671>CTS3261>CTS6619,Z7661 10.7%J2a-CTS7683>L26>PF5088>PF5160>L24>Z393>L25>Z438 9.2%J2a-CTS7683>L26>PF5088>PF5125>Z2227>L558>M67>Z1847>PF5132>M92 7.1%J2b-M102>Z529>M205 5.3%J2a-CTS7683>L26>PF5088>PF5125>Z2227>Z6065>Y7708>Y7702>M47 4.0%J2a-CTS7683>L26>PF5088>PF5160>L24>Z393>L25>PF4888 3.6%J2a-CTS7683>L26>Z6064>Z6061>Z6057 3.4%J2a-CTS7683>L26>PF5088>PF5160>PF5197>PF5172>Z7314>PF5169>PF5174 3.2%J2a-CTS7683>L26>PF5088>PF5160>PF5197>PF5172>Z7314>PF5169>FGC16096>PH4970,Y14400 3.0% See https://docs.google.com/spreadsheets/d/1Kfvde5gHQ0EVV9lLVnjMLgtyOgLJQPZdywqyu2-idSc/edit?usp=sharing 

Y-SNP analysis of I4331, J2b2a-L283, Bronze Age Croatia – Mathieson et al. 2018

 in L283 / M241 / Phylogeny / SNPs  tagged ancient DNA / balkans / CTS3617 / J2b2 / J2b2a / J2b2a1 / L283 / M241 / Y15058 by

New DNA paper from Mathieson et al. 2018, The Genomic History of Southeastern Europe, gave us ancient DNA data from 225 individuals who lived in southeastern Europe and surroundings. Supplementary information from the paper states one of the sites analyzed was the Veliki Vanik burial mound, which is located near the town of Vrgorac in Split-Dalmatia County, in southern Croatia. […]

J2-M172@FTDNA Project Administration Changes Announcement

 in FTDNA / Grouping / Haplogroup / Haplotypes / J2-M172 / Phylogeny / SNPs / STR-Markers / Y-sequence  tagged J2@FTDNA by

As many of you may know or have noticed the main Administration and Support of the J2-M172@FTDNA Project by Chris Rottensteiner since February 2017 has declined considerably, caused by considerably less free time which makes volunteer working  on the daily and weekly tasks impossible at the same pace as I did from 2012 to 2016 . My fellow Co-Admins in J2 […]

J2a-Z6048: refinement in the no-Caucasus J2a* clade

 in Haplogroup / Phylogeny / SNPs / Z6049 by

Recent new NextGenSequence results being derived/positive for J2a-Z6048 (old J2a* and without considerable Caucasus presence like the brother SK1321/Y12622) allowed a substantial improvement of the phylogeny. See also tree.j2-m172.info/?Hg=J2a1b1, yfull.com/tree/J-Z6050/ Wim Penninx helped by filtering reliable combBED area SNPs from the two Punjab samples. The YFull raw-data analysis of the Sardinian samples is the only way to reconstruct satisfyingly reliable […]

J2b2b-PH1648,Z2455,Z2454 refined: Y18044,CTS8204 & Z42941>Z42983

 in Haplogroup / Phylogeny / Z575  tagged CTS8204 / PH1648 / Y18044 / Z2454 / Z2455 / Z42941 / Z42983 by

One of the oldest paragroups of J2b gets a little refined by cross-analysis of the known samples and the new YFull sample SRR2098211 Qatar which should form an ancestral haplogroup with the Jewish subcluster Z42983. It is not known if the PGP29 sample is also of known Jewish ancestry but a BigY match to B12464 is and shares at least […]

possibly J2b1-M205 basal structure defined: CTS1969,CTS5338,YP13,PH4306,PH1089,Y22066

 in M205 / Phylogeny  tagged CTS1969 / CTS5338 / News / PH1089 / PH4306 / Y22066 / YP13 by

Further analysis of NextGenSequences at YFull (see yfull.com/tree/J-M205/) combined with results from scientific studies (SNP, VCF & BAM results) has revealed a more consistent and hopefully informative basal substructure for J-M205 (see tree.j2-m172.info/?Hg=J2b1) then what was available at the latest major update: J2b-M205>PH4306: a little substructure for this isolated lineage. See also yfull.com/tree/J-M205/ It seems likely that the many remaining […]

New J2b2-Z1297 subclade: Y23094,B440

 in J2b-M102 / L283 / M241 / Phylogeny / Z575  tagged J2b2 / J2b2a1 / L283 / M241 / Y23094 / Z1297 by

YFull analysis of kit 447170/YF05542, Sweden BigY BAM file, and Francalacci et al Sardinian samples ERS256808, combined with results from scientific studies (EB-35147 Alban2 and ERR1025614), allowed to discover a new Z1297 subclade: J2b2-Y23094,B440 – parallel (brother) to Z1295: See also: https://www.yfull.com/tree/J-Y23094/ And: http://tree.j2-m172.info/?Hg=J2b2a1a1a1a According to YFull YTree v.4.09, J2b2-Z1297 diversified ca. 4200 ybp and TMRCA of J2b2-Y23094 is ca. 3200 ybp. Predicted Y23094 Y-STR haplotypes […]

ancient Zagros J2b* Iran (Abdul Hosein, Early Neolithic) – Broushaki et al.

 in Haplogroup / J2-M172 / J2a-M410 / J2b-M102 / M205 / M241 / PF5050 / Y-sequence  tagged ancient DNA / Fertile Crescent / Iran / Middle East / Near East / Persia / West Asia by

New J2b data from Broushaki et al. 2016 (BAM raw data): AH2 West Iran Early Neolithic (8205–7756 BC): one of three individuals. From Tepe Abdul Hosein located South East of Ganj Dareh in Central Zagros. Broushaki et al. not assigned, Genetiker J2b-M12* Own analysis: J2b-M12(xCTS560,Z620). Coverage is low but ok. Of 40 J2b SNPs 10 had positive (derived) calls and […]

first ancient J2 from Iran (Mesolithic, Copper Age) and Levant (Bronze Age) – Lazaridis et al. first farmers

 in Haplogroup / J2-M172 / J2a-M410 / J2b-M102 / M205 / M241 / PF5050 / Y-sequence  tagged ancient DNA / Fertile Crescent / Iran / Jordan / Levant / Middle East / Near East / Persia / West Asia by

The dataset of the huge Lazaridis et al. 2016 paper is available for download (Reich Lab, BAM raw data). Great that the authors released the data before formal publication and even before peer review. Those three new study samples have J2 Y-DNA: I1293 North Iran Mesolithic (HotuIIIb): 1.5-2 year old individual. From Hotu Cave located in the foothills of the […]